% start runsim to compute shared gene funtion
%
% (C) P. Sykacek 2006 <peter@sykacek.net>

addpath('./helpers/');
addpath('./statsgen/');
addpath('./probitem/');
addpath('./mca_base/');
addpath('./combanalysis.glb.hphp/');
addpath('./');

% get package base directory
% set folds here (use e.g. 10 to get generalisation accuracy estimates)
folds='1';
% set Prior probability of being a shared gene.
% interpretation of the latter: fraction of genes we expect to be
% of shared importance).
pricnt='1';
% name with definition of shared analysis
deffile='./shareanalysis.def';
% name of result file
resfile='./sharetestres.mat';
calccoreg(folds, pricnt, deffile, resfile);