# Setup Script for Tutorial and Library of
# Bayesain Modeling of Shared Gene Function,
# P. Sykacek, R. Clarkson, C. Print, R. Furlong, and G. Micklem,
# BOKU TR, 2006. 
# (see also http://www.sykacek.net/reseacrh.html#mcabf)
# (C) P. Sykacek, 2006 <peter@sykacek.net>
#
# first we get all script and data files
wget http://www.sykacek.net/suppmcabf/calccoreg.m    
wget http://www.sykacek.net/suppmcabf/crossann.tsv  
wget http://www.sykacek.net/suppmcabf/exp2eff.tsv   
wget http://www.sykacek.net/suppmcabf/README
wget http://www.sykacek.net/suppmcabf/combres2csv.m  
wget http://www.sykacek.net/suppmcabf/exp1eff.tsv   
wget http://www.sykacek.net/suppmcabf/exp2mca.tsv   
wget http://www.sykacek.net/suppmcabf/runsim.m
wget http://www.sykacek.net/suppmcabf/crossann.m     
wget http://www.sykacek.net/suppmcabf/exp1mca.tsv   
wget http://www.sykacek.net/suppmcabf/genespec.csv  
wget http://www.sykacek.net/suppmcabf/shareanalysis.def
# get all library archives
wget http://www.sykacek.net/mlablib/combanalysis.glb.hphp.tar.gz  
wget http://www.sykacek.net/mlablib/mca_base.tar.gz  
wget http://www.sykacek.net/mlablib/probitem.tar.gz
wget http://www.sykacek.net/mlablib/helpers.tar.gz                
wget http://www.sykacek.net/mlablib/mca_fuse.tar.gz  
wget http://www.sykacek.net/mlablib/statsgen.tar.gz
# and untar them
tar -xzf combanalysis.glb.hphp.tar.gz
tar -xzf mca_base.tar.gz
tar -xzf probitem.tar.gz
tar -xzf helpers.tar.gz
tar -xzf mca_fuse.tar.gz
tar -xzf statsgen.tar.gz
echo "As a tutorial it is now recommended to run crossann.m to"
echo "cross annotate the two experiments, runsim.m to obtain"
echo "the probabilities of shared gene function and combres2csv.m"
echo "to extract the resulting rank list as .csv file. "
echo "For more information see README in this directory,"
echo "http://www.sykacek.net/research.html#mcabf"
echo "and the technical reports available for download from there."
echo "(C) P. Sykacek 2006 - This software is under GPL2 and comes "
echo "                      without any warranty."